Index

Symbols

--base64 jazzy-vis command line option --fig_size jazzy-vis command line option --flatten_molecule jazzy-vis command line option --highlight_atoms jazzy-vis command line option --ignore_sa jazzy-vis command line option --ignore_sdc jazzy-vis command line option

--ignore_sdx jazzy-vis command line option --opt jazzy-vec command line option jazzy-vis command line option --sa_threshold jazzy-vis command line option --sdc_threshold jazzy-vis command line option --sdx_threshold jazzy-vis command line option --strength_only jazzy-vec command line option

A

any_hydrogen_neighbors() (in module jazzy.core)

C

calculate_delta_apolar() (in module jazzy.core) calculate_delta_interaction() (in module jazzy.core)

calculate_delta_polar() (in module jazzy.core) calculate_polar_strength_map() (in module jazzy.core) calculate_q_and_delta_q() (in module jazzy.core)

D

depict_strengths() (in module jazzy.visualisation)

G

get_acceptor_atom_strength() (in module jazzy.core) get_all_neighbours() (in module jazzy.core) get_atom_and_nbrs_idxs_dict() (in module jazzy.core) get_charges_from_atom_list() (in module jazzy.core)

get_charges_from_kallisto_molecule() (in module jazzy.core) get_covalent_atom_idxs() (in module jazzy.core) get_donor_atom_strength() (in module jazzy.core) get_lone_pairs() (in module jazzy.core)

I

interaction_strength() (in module jazzy.core)

J

jazzy-vec command line option --opt --strength_only SMILES jazzy-vis command line option --base64 --fig_size --flatten_molecule --highlight_atoms --ignore_sa --ignore_sdc --ignore_sdx --opt --sa_threshold --sdc_threshold --sdx_threshold SMILES

jazzy.api module jazzy.core module jazzy.visualisation module

K

kallisto_molecule_from_rdkit_molecule() (in module jazzy.core)

M

module jazzy.api jazzy.core jazzy.visualisation

R

rdkit_molecule_from_smiles() (in module jazzy.core)

S

SMILES jazzy-vec command line option jazzy-vis command line option